Web11 feb. 2024 · Method to employ in the estimation of gene-set enrichment scores per sample. By default this is set to gsva (Hänzelmann et al, 2013) and other options are … WebGSVA / ssGSEA command-line interface and Python module. The GSVA (gene-set variance analysis) package from R bioconductor provides efficient computation of single …
Bioconductor - GSVA
Web28 mei 2024 · I want to run "GSVA" function in R for performing ssGSEA (single sample Gene Enrichment Analysis), but it says that the input class type is invalid. I'm using a … Web5 feb. 2024 · --method {gsva,ssgsea,zscore,plage} Method to employ in the estimation of gene-set enrichment scores per sample. By default this is set to gsva (Hanzelmann et al, … evelyn montañez macias valadez
Comparison of differential pathway activity identification of GSVA ...
WebGSVA Gene Set Variation Analysis for microarray and RNA-seq data Package index Search the GSVA package Vignettes README.md Gene Set Variation Analysis Functions 36 … Webmethod=c("gsva", "ssgsea", "zscore", "plage"), kcdf=c("Gaussian", "Poisson", "none"), abs.ranking=FALSE, min.sz=1, max.sz=Inf, parallel.sz=0, parallel.type="SOCK", … WebGSVA / ssGSEA command-line interface and Python module The GSVA (gene-set variance analysis) package from R bioconductor provides efficient computation of single-sample gene-set enrichment analysis (ssGSEA). This pakcage provides a python implmented CLI, and Python module with Pandas inputs and outputs, as well as a docker … evelyn montalvo