Nettet2. aug. 2024 · Besides Fst, haplotype-based methods have also been used in signatures of selection studies. The integrated haplotype score (iHS) proposed by Voight et al. (2006) and the cross-population extend haplotype homozygosity (XP-EHH) test proposed by Sabeti et al. (2007) can help to NettetA total of 282 genes were detected under selection in the test population based on the fixation index (Fst), integrated haplotype score (iHS), and cross-population extend …

Positive Selection and Adaptive Introgression of Haplotypes from

NettetWith the use of Extended Haplotype Homozygosity test, supplemented with correction for variation in recombination rates across the genome, we created map of selection … NettetThe integrated Haplotype Score (iHS) approach was developed by Voight et al. (2006) as an improvement to the Extended Haplotype Homozygosity (EHH) approach to … tapety na laptop harry potter

rehh : an R package to detect footprints of selection in genome …

Nettet16. jun. 2011 · In this study, two different and complementary methods--integrated Haplotype Homozygosity Score ( iHS ) and population differentiation index (F ST )- … Nettet15. okt. 2024 · The integrated haplotype score (iHS) test was performed to investigate selection signatures in the Shanghai Holstein population. Before computing iHS, the ancestral allele of all bovine SNPs was inferred as the most common allele in the entire dataset, as described by Bahbahani et al. (2015) and Bertolini et al. ( 2024). Nettet1. jun. 2006 · Haplotypic homozygosity (the probability of selecting two identical haplotypes at random from a population) is a measure of LD that has the ability to capture information about subgroups, or “partitions,” of haplotypes in the population marked by a specific allele. 3 Furthermore, haplotypic homozygosity has recently become the basis … tapety na komputer ruchome